| A.1 |
Labelling of Peptide Fragmented Mass Spectra in Proteomic Studies..
B. Gerrits*, C. Panse, B. Bodenmiller, and R. Schlapbach
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| A.2 |
Exact Quantification of Complex Protein Mixtures using MeCAT Metal Coded Tagging..
R. Ahrends*, U. Bergmann, S. Pieper, B. Neumann, C. Scheler, and M.W. Linscheid
|
| A.3 |
On the Reproducibility of a Fractionation Procedure for Fish Muscle Proteomics. .
P. Rodrigues*, T. Silva, F. Jessen, and J. Dias
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| A.4 |
Optimization of Peak Capacity in One and Two-Dimensional NanoLC..
S. Eeltink, B. Dolman, R. Swart, and G. Tremintin*
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| A.5 |
Improving the Utility of Electron-Transfer Dissociation..
K.F. Medzihradszky*, S.P. Salas-Castillo, A.L. Burlingame
|
| A.6 |
Enrichment and Characterization of Secreted Glycopeptides Bearing SA1-0Galb1-3GalNAca Structures..
Z. Darula and K.F. Medzihradszky*
|
| A.7 |
Enrichment of O-GlcNAc Modified Proteins by the Periodate Oxidation – Hydrazide Resin Capture Approach..
E. Klement, Z. Lipinszky, Z. Kupihar, A. Udvardy, K.F. Medzihradszky*
|
| A.8 |
Proteome Survey Using Affinity Proteomics and Mass Spectrometry..
N. Olsson*, C. Wingren, M. Mattsson, Peter James, Fredrik Nilsson, and C.A.K. Borrebaeck
|
| A.9 |
Sampling the N-terminal Proteome of Human Serum and Plasma..
P. Wildes* and J. Wells
|
| A.10 |
Profiling Cell Surface and Secreted Glycoproteins Isolated from Human Thyroid Cancer Cell Lines..
T-Y. Yen*, N. Haste, A. Castanieto, A. Arcinas, and B. Macher
|
| A.11 |
Chemical Cross-linking in Complex Mixtures..
M.J. Trnka* and A.L. Burlingame
|
| A.12 |
Rapid MRM Assay Development Strategies -- Intelligent Software and Acquisition Strategies for Highest Productivity. .
S. Mollah*, M.M. Champion, and C.L. Hunter
|
| A.13 |
Structural Proteins in the Complex Phage 201phi2-1..
S. Weintraub*, J.A. Thomas, K. Hakala, P. Serwer and S.C. Hardies
|
| A.14 |
A Quick Method for Differential PTM Analysis of Hyper-modified Proteins by FTICR/ECD/MS/MS and Bioinformatics..
F. Li*, S. Guan, F. Chu, R. Talroze and A.L. Burlingame
|
| A.15 |
Improved Data Mining by Using TPP-based Analysis Workflows for Searching MS/MS Data..
A. Quandt*, L. Malstroem, H. Lam, D. Shteynberg, R. Aebersold
|
| A.16 |
Microwave-assisted Phosphoproteomics..
P. Liu* and W. Sandoval
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| A.17 |
Proteome Analysis of Apoplastic Proteins in Rice Shoot Respond to Salt Stress..
Y. Song, A.L. Burlingame, and Y. Guo*
|
| A.18 |
Investigation Into the Use of Lys-N Combined with Electron Transfer Dissociation on a Quadrupole Time-of-Flight Mass Spectrometer for Peptide Sequencing..
J. Langridge*, J. Brown, S. Mohammed, N. Taouatas, I.D.G. Campuzano, and A.J.R. Heck
|
| A.19 add |
A Novel pI Based Fractionation Device for Bottom-up Proteomic Studies..
S.M. Cologna*, W.K. Russell, G. Vigh, and D.H. Russell
|
| A.20 add |
Evaluation of the Low-Specificity Proteases in Sequence Variant Analysis of Therapeutic Proteins Using LTQ Orbitrap Mass Spectrometer..
J. Wang*, O. Borisov, M. Alvarez, F. Vega, C. Yu, and V. Ling
|
| A.21 add |
Microfluidic Chip-LC/MS for Rapid Glycan Profiling of N-linked Monoclonal Antibodies..
M. Bynum*, H. Yin, K. Felts, Y. Lee, C. Monell, and K. Killeen
|
| A.22 add |
MRM Quantitation of N-Glycosylation Distribution in Therapeutic Recombinant IgG Using Triple Quadrupole Linear Ion Trap Technology..
L. Nuwaysir*, J. Albanese, C. Hunter, and C. Fernández-Metzler
|
| B.1 |
Elucidating Methyltransferase Target Amino Acid Residues and Downstream Modification Events by Quantitative Mass Spectrometry..
S.M. Eliuk*, F. Chu, B. Panning, and A.L. Burlingame
|
| B.2 |
Ecotoxicoproteomics to Study Microcystin-LR Effects in Medaka Fish..
M. Edery*, M. Malécot, K. Mezhoud, A. Marie, D. Praseuth, and S. PuiseuxDao
|
| B.3 |
Analysis of the Death Inducing Signaling Complex (DISC) Using Mass Spectrometry..
V. Pham*, Z. Jin, R. Pitti, Y. Li, D. Lawrence, A. Ashkenazi, and J. Lill
|
| B.4 |
Proteome-scale Identification of Mitochondrial Transit Peptide Cleavage Sites..
E. Crawford and J.A. Wells
|
| B.5 |
Enrichment and Analysis of Phosphopeptides Shaved from Membrane Fraction of Salt-stressed Arabidopsis..
I-F. Chang*, J-L. Hsu, L-Y. Wang, and S.Y. Wang
|
| B.6 |
Identification of Protein-Protein Interactions using Chemical Cross-linking and CID and ETD Tandem Mass Spectrometry..
X. Du*, J. Rorie, S. Chowdhury, J. Adkins, G. Anderson, and R. Smith
|
| B.7 |
Quantitative 2D-Gel Analysis of Isotope Encoded Proteins Using SERRS Detection. .
G. Knudsen*, B.M. Davis, S.K. Deb, Y. Loethen, R. Gudihal, P. Perera, D. BenAmotz, and V.J. Davisson
|
| B.8 |
Global Analysis of Caspase Proteolysis During Inflammation..
N. Agard and J.A. Wells
|
| B.9 |
Two Mass Spectrometry Based Approaches for the Investigation of the Heparin Interactome..
A. Ori*, M.C. Wilkinson, and D.G. Fernig
|
| B.10 |
Electron Transfer Dissociation Analysis of the Urinary Peptidome in Pregnancy..
S. Hart*, R. Blankley, and S. Guan
|
| B.11 |
Non-Targeted Characterization of Glycopeptides in Lysosomal Storage Disease Samples..
C. Dorschel*, R.R. Sprenger, J.M.F.G. Aerts, J.P.C. Vissers, and S.J. Geromanos
|
| B.12 |
A Novel Combinatorial Library/Mass Spectrometric Approach for Detection of Autoantibody Signatures to Cancer-Associated O-glycoprotein Epitopes..
S.B. Levery*, S.K. Kracun, O. Blixt, E. Clo, K.J. Jensen, and H. Clausen
|
| B.13 |
Peak Extraction and Deisotoping of Low-Level MSMS spectra from Quadrupole/TOF Instruments..
J. Chen*, J. Trinidad, S. Guan, and A.L. Burlingame
|
| B.14 |
Network Analysis of Gcn5 HAT Complexes Refines the Organizational Makeup of the SAGA, SliK (SALSA) and ADA Complexes..
M. Sardiu*, K. Lee, S. Swanson, J. Workman, L. Florens, and M.P. Washburn
|
| B.15 |
Quantitative Label-free Analysis of Complex Protein Mixtures Through the MFPaQ Software..
E. Mouton Barbosa*, D. Bouyssié, A. Gonzalez de Peredo, F. Roux-Dalvai, O. Burlet-Schiltz, B. Monsarrat
|
| B.16 |
Pigment Epithelium-Derived Factor: A Biomarker of Preeclampsia with a Role in the Pathogenesis of the Syndrome..
K. Williams*, Y. Zhou, and S. Fisher
|
| B.17 |
Quantitative Comparison of 13-lined Ground Squirrel Kidney Proteins in Six Stages of Mammalian Hibernation..
N.M. Heidlebaugh, A. Karimpour-Fard, S.L. Martin, and L.E. Epperson*
|
| B.18 add |
Fragment Assignment by Visual Assistance (FAVA) Program for Analysis of Complex High Resolution MSMS Spectra..
S. Guan* and A.L. Burlingame
|
| B.19 add |
Optimizing the Peptide Quantitation Workflow from Biomarker Discovery to Validation..
K. Waddell*, C. Miller, and N. Tang
|
| B.20 add |
Proteomics Approaches to Identifying Calcineurin Substrates in Yeast..
A. Goldman*, B. Bodenmiller, I. Uzoma, R. Aebersold, H. Zhu, and M. Cyert
|
| B.21 add |
Initial Characterization of Lysine Propionylation and Lysine Butyrylation Pathways..
Z. Cheng, Z. Zhang, K. Zhang, and Y. Zhao*
|
| B.22 add |
Immunoaffinity Based Phosphopeptide Capture Combined with AQUA Peptides to Accurately Quantitate Changes in the Inhibition of c-Met Autophosphorylation..
C. L. Farnsworth*, J. C. Silva, M. P. Stokes, J.-M. Ren, J. McNeill, and J. Rush
|
| C.1 |
Epitope Tagging of Endogenous Proteins in Human Cells for Discovery of Novel Protein/Protein Interactions..
T. Waldman*, J-S. Kim, W. Lane, and F. Bunz
|
| C.2 |
Quantitative Analysis of the Phosphoproteome of Resting and Activated Human Primary T Cells..
P. Ruperez*, J.A. Oses-Prieto, A. Gago, A.L. Burlingame
|
| C.3 |
ATAQS Computational Software Tool for High Throughput Transition Optimization and Validation for SRM..
M-Y. Brusniak, D. Campbell, J. Chen, M. Christiansen, E. Deutsch, C. Kwok, S. Letarte, H. Ramos, P. Picotti, L. Reiter, J. Watts, and R. Aebersold
|
| C.4 |
Mass-Spectrometric Identification and Relative Quantification of N-linked Cell Surface Glycoproteins..
B. Wollscheid*, D. Bausch-Fluck, C. Henderson, R. O'Brien, M. Bibel, R. Schiess, R. Aebersold, and J.D. Watts
|
| C.5 |
Chronic Ethanol Feeding Affects Proteasome Interacting Proteins..
M-P. Bousquet-Dubouch*, S. Nguen, D. Bouyssié, O. Burlet-Schiltz, S.W. French, B. Monsarrat, and F. Bardag-Gorce
|
| C.6 |
Phosphorylation Dynamics at Synapses in the Central Nervous System..
J.C. Trinidad*, A. Thalhammer, R. Schoepfer, and A.L. Burlingame
|
| C.7 |
Linaclotide, a Novel Peptide Therapeutic Agent in Clinical Development for the Treatment of IBSC and Chronic Constipation is Digested in the Mouse and Human Small Intestine to Small Peptides..
M. Kessler*, R.W. Busby, J.D. Wakefield, W.P. Bartolini, P. Germano, A.P. Bryant, C.B. Kurtz, and M.G. Currie
|
| C.8 |
Large Scale Multiplex Stable Isotope Dimethyl Labeling Applied to the Quantitative Analysis of Tyrosine Phosphorylation..
P. Boersema*, L.Y. Foong, V. Ding, S. Lemeer, S. Mohammed, R. Raijmakers, B. van Breukelen, J. Boekhorst, A.B.H. Choo, and A.J.R. Heck
|
| C.9 |
Structural Characterization of Novel Components from the Venom of the Mexican Scorpion Vaejovis mexicanus smithi by Electron Capture Dissociation and Electron Transfer Dissociation..
S.P. Salas-Castillo*, K.F. Medzihradszky, S. Guan, and A.L. Burlingame
|
| C.10 |
Proteomics Analysis Reveals a New Player Involved in DNA Repair and/or Replication..
J. Gilmore*, M.E. Sardiu, S. Venkatesh, B. Stutzman, and M.P. Washburn
|
| C.11 |
Quantitative Comparison of the Shigella dysenteriae Proteome Assessed by Two Label-free Global Profiling Methods, APEX and 2D gels..
S. Kuntumalla*, J.C. Braisted, S-T. Huang, P.P. Parmar, D.J. Clark, H. Alami, Q. Zhang, A. Donohue-Rolfe, S. Tzipori, R.D. Fleischmann, S.N. Peterson, and R. Pieper
|
| C.12 |
Characterization of Protein Kinase C-catalyzed CYP3A4 Phosphorylation by LC Tandem Mass Spectrometry..
Y-Q. Wang*, S. Guan, A.L. Burlingame, and M.A. Correia
|
| C.13 |
Analysis of H5N1 Influenza Hemagglutinin Glycosylation by LC/MS/MS Utilizing Hydrazide Capture SPE and HILIC Separation of Intact Glycopeptides..
T.A. Blake*, T.L. Williams, J.L. Pirkle, and J.R. Barr
|
| C.14 |
Mapping the Chromatin Structure Controlling Life Cycle Progression of the Human Malaria Parasite..
A. Saraf*, S. Cervantes, L. Florens, and K. Le Roch
|
| C.15 |
Developing Optimized Sensitivity for Proteomic Characterization of Minimal Numbers..
J.A. Oses-Prieto*, D. Maltby, and A.L. Burlingame
|
| C.16 |
A Proteomics Approach to Overcoming Bacterial Drug Resistance: The Ribosomal QconCAT..
J. Barber*, Z. Al-majdoub, and S. Gaskell
|
| C.17 |
Proteomic Analysis of the Venom from the Mexican Scorpion Centruroides limpidus limpidus..
C.V. Ferreira Batista*, O. VillaHernández, L. Hernández Orihuela, V. Pando, and L.D. Possani
|
| C.18 add |
Proteomic Characterization of ALCAM/CD166 Expression in Normal and Neoplastic Thyroid Tissues and Cell Lines..
F. Miccichè, M. Fabbi, P. Mondellini, L. Da Riva, S. Ferrini, S. Canevari, M.A. Pierotti, and I. Bongarzone*
|
| C.19 add |
Methodological Refinements in iTRAQTM Reagent-Based “Tagless” Strategy of Identification and Purification of Soluble Protein Complexes in Bacteria..
M. Dong*, H. Liu, M. Choi, E. Szakal, J.-M. Chandonia, S. Allen, J. Geller, M. Singer, G. Liu, S. Hall, S. Fisher, T. Hazen, L. Yang, J. Jin, H. E. Witkowska, and M. Biggin
|
| C.20 add |
Profiling HDAC Inhibition in a Time Course Study of Colon Carcinoma Cells Using Immunoaffinity-Based Enrichment of Acetylated Peptides and Label-Free Quantitation..
J.C. Silva*, C.L. Farnsworth, M.P. Stokes, J.-M. Ren, J. McNeill, and J. Rush
|
| C.21 add |
Complex Peptide Mixture Fractionation via Parallel Isoelectric Focusing for Direct LC-MS/MS Analysis..
D. Argoti*, W. Kuhlman, J. Dasch, and S. Haralampu
|
| C.22 add |
Protein Characterization Using Rapid Chip Based Nanoflow LC/MS..
N. Tang*, C. Miller, and K. Waddell
|
